Team Blitz

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Team Members

• Parth Malkan
• Rashmi Girmal
• Joy Shukla
• Utkarsh Gupta

Velvet Genome Assembly Algorithm

• Velvet Algorithm

• Reference Paper
• Poster
• Presentation
• Velvet Implementation on Convey

• Links to Velvet Material

• Journal Article
• Latest Version of Velvet software available for download

• Parallelizing Velvet Algorithm

• Reference Paper
• Presentation

Wiki Contributions

• Parth

• Week 1

• Useful Unix Commands

• Week 2

• Dos to Unix translation

• Shashank

  | Useful video on HC-2 introduction

• Joy and Rashmi

• Week 1

• CUDA Basics
• Convey HC-2 Architectural Overview

• Week 2

• Vector adder basic block diagram
• Verilog tutorial for beginners

• Week 3

• Updated Convey PDK Tutorial
• Verilog in one day

• Week 5

• FSM for reading an array from memory given the address of the array

• Utkarsh

• Week 1

• High Performance Heterogeneous Computing with the Convey HC-1
• Iowa State University 2012 MemoCODE

• Week 2

• Difference between VHDL, Verilog and SystemVerilog

• Week 3

• Convey HC in Genome Sequencing

• Week 4

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