Cpre584 - User contributions [en]

Team Challenger

2013-03-12T23:26:34Z

Xinying: /* Wiki Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== References ==
* [http://i.cs.hku.hk/~alse/hkubrg/projects/idba/ IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler]

== Wiki Contributions ==

* Xinying Wang
:* week 1
::* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
::* Weekly presentation slides [[Media:week1slides.pptx]]
:* week 2
::* A Sparse Matrix Personality for the Convey HC-1 [http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=5771239&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D5771239]
:* week 3
::* Translate verilog version adder file to vhdl code.
::* Discuss the implementation of QR application on convey system
::* Cordic Algorithm Implementations on FPGA [http://cutler.eecs.berkeley.edu/classes/ee225c/Papers/cordic.pdf]
:* week 4
::* Convey computing with bioinformatics applications [http://hpcsociety.org/Resources/Documents/121212Kirby-CONVEY-SHPCP_121212.pdf]
:* week 5
::* Tutorial for COREGEN [http://homepages.cae.wisc.edu/~ece554/website/Xilinx/Coregen_user_guide.pdf]
:* week 6
::* GPU-Euler: Sequence Assembly using GPGPU[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6062988]
:* week 7
::* Genome assembly [http://www.csc.kth.se/utbildning/kth/kurser/DD2399/omsys10/lectures/genomeassembly.pdf]
* Qilin Li
:* week 1
::* Introduction to Compilers for Convey [http://www.conveycomputer.com/files/3913/5085/4426/Compiler_Data_Sheet.pdf]
::* GPGPU Programming on example of CUDA [http://panoramix.ift.uni.wroc.pl/~maq/cuda/prezentacja-cuda-eng.pdf]
::* Parallel Programming in CUDA C [http://developer.download.nvidia.com/books/cuda-by-example/cuda-by-example-sample.pdf]
:* week 2
::* [http://www.cs.colby.edu/maxwell/courses/tutorials/maketutor/ A Simple Makefile Tutorial]
:* week 3
::* [http://newbiedoc.sourceforge.net/text_editing/vim.html#MODES-CL A Simple VIM Tutorial]
:* week 4
::* [[Media:ConveySystemAdministrationGuide.pdf | Convey System Administration Guide]]
* Zhong Hu
::* CUDA Global Memory Usage & Strategy. [http://developer.download.nvidia.com/CUDA/training/cuda_webinars_GlobalMemory.pdf]
::* CUDA C++ code samples.[http://docs.nvidia.com/cuda/cuda-samples/index.html]
:* make-up for week 2
::* QR ecomposition on GPUs[http://dl.acm.org/citation.cfm?id=1513904]
::* Introduction to Householder algorithm in QR decomposition application[http://math.fullerton.edu/mathews/n2003/householdermod.html]
:* make-up for week 3
::* CUDA Memory Model[https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=7&cad=rja&ved=0CEoQFjAG&url=https%3A%2F%2Fhub.vscse.org%2Fsite%2Fresources%2F2010%2F06%2F00048%2FCUDA_04.pdf&ei=_dwZUY73NKji2gWqo4GYDQ&usg=AFQjCNGgxpCFWYepx6v32fTHNyRI1pOOtA&sig2=6TW0elRmtCKW3i_fAqAT_g&bvm=bv.42261806,d.b2I]
::* CUBLAS Library Usage Reference[https://www.docs.nvidia.com/cuda/pdf/CUDA_CUBLAS_Users_Guide.pdf]
:* week 4
::* system Verilog tutorial[http://www.asic-world.com/systemverilog/tutorial.html]
:* week 5
::* most commonly used CUDA wiki website[https://developer.nvidia.com/category/zone/cuda-zone]
::* Nvidia GPU versions and corresponding compute capability[http://en.wikipedia.org/wiki/CUDA#Version_features_and_specifications]
::* methods to check CUDA memory constraints in terms of different GPU versions[http://3dgep.com/?p=1913]
:* week 6
::* open source software lists for genome alignment and assembly[http://seqanswers.com/wiki/Software/list].

Team Challenger

2013-02-19T22:44:59Z

Xinying: /* Wiki Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Wiki Contributions ==

* Xinying Wang
:* week 1
::* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
::* Weekly presentation slides [[Media:week1slides.pptx]]
:* week 2
::* A Sparse Matrix Personality for the Convey HC-1 [http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=5771239&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D5771239]
:* week 3
::* Translate verilog version adder file to vhdl code.
::* Discuss the implementation of QR application on convey system
::* Cordic Algorithm Implementations on FPGA [http://cutler.eecs.berkeley.edu/classes/ee225c/Papers/cordic.pdf]
:* week 4
::* Convey computing with bioinformatics applications [http://hpcsociety.org/Resources/Documents/121212Kirby-CONVEY-SHPCP_121212.pdf]
:* week 5
::* Tutorial for COREGEN [http://homepages.cae.wisc.edu/~ece554/website/Xilinx/Coregen_user_guide.pdf]
* Qilin Li
:* week 1
::* Introduction to Compilers for Convey [http://www.conveycomputer.com/files/3913/5085/4426/Compiler_Data_Sheet.pdf]
::* GPGPU Programming on example of CUDA [http://panoramix.ift.uni.wroc.pl/~maq/cuda/prezentacja-cuda-eng.pdf]
::* Parallel Programming in CUDA C [http://developer.download.nvidia.com/books/cuda-by-example/cuda-by-example-sample.pdf]
:* week 2
::* [http://www.cs.colby.edu/maxwell/courses/tutorials/maketutor/ A Simple Makefile Tutorial]
:* week 3
::* [http://newbiedoc.sourceforge.net/text_editing/vim.html#MODES-CL A Simple VIM Tutorial]
:* week 4
::* [[Media:ConveySystemAdministrationGuide.pdf | Convey System Administration Guide]]
* Zhong Hu
::* CUDA Global Memory Usage & Strategy. [http://developer.download.nvidia.com/CUDA/training/cuda_webinars_GlobalMemory.pdf]
::* CUDA C++ code samples.[http://docs.nvidia.com/cuda/cuda-samples/index.html]
:* make-up for week 2
::* QR ecomposition on GPUs[http://dl.acm.org/citation.cfm?id=1513904]
::* Introduction to Householder algorithm in QR decomposition application[http://math.fullerton.edu/mathews/n2003/householdermod.html]
:* make-up for week 3
::* CUDA Memory Model[https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=7&cad=rja&ved=0CEoQFjAG&url=https%3A%2F%2Fhub.vscse.org%2Fsite%2Fresources%2F2010%2F06%2F00048%2FCUDA_04.pdf&ei=_dwZUY73NKji2gWqo4GYDQ&usg=AFQjCNGgxpCFWYepx6v32fTHNyRI1pOOtA&sig2=6TW0elRmtCKW3i_fAqAT_g&bvm=bv.42261806,d.b2I]
::* CUBLAS Library Usage Reference[https://www.docs.nvidia.com/cuda/pdf/CUDA_CUBLAS_Users_Guide.pdf]
:* week 4
::* system Verilog tutorial[http://www.asic-world.com/systemverilog/tutorial.html]
:* week 5
::* most commonly used CUDA wiki website[https://developer.nvidia.com/category/zone/cuda-zone]
::* Nvidia GPU versions and corresponding compute capability[http://en.wikipedia.org/wiki/CUDA#Version_features_and_specifications]
::* methods to check CUDA memory constraints in terms of different GPU versions[http://3dgep.com/?p=1913]

Team Challenger

2013-02-13T07:11:59Z

Xinying: /* Wiki Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Wiki Contributions ==

* Xinying Wang
:* week 1
::* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
::* Weekly presentation slides [[Media:week1slides.pptx]]
:* week 2
::* A Sparse Matrix Personality for the Convey HC-1 [http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=5771239&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D5771239]
:* week 3
::* Translate verilog version adder file to vhdl code.
::* Discuss the implementation of QR application on convey system
::* Cordic Algorithm Implementations on FPGA [http://cutler.eecs.berkeley.edu/classes/ee225c/Papers/cordic.pdf]
:* week 4
::* Convey computing with bioinformatics applications [http://hpcsociety.org/Resources/Documents/121212Kirby-CONVEY-SHPCP_121212.pdf]
* Qilin Li
:* week 1
::* Introduction to Compilers for Convey [http://www.conveycomputer.com/files/3913/5085/4426/Compiler_Data_Sheet.pdf]
::* GPGPU Programming on example of CUDA [http://panoramix.ift.uni.wroc.pl/~maq/cuda/prezentacja-cuda-eng.pdf]
::* Parallel Programming in CUDA C [http://developer.download.nvidia.com/books/cuda-by-example/cuda-by-example-sample.pdf]
:* week 2
::* [http://www.cs.colby.edu/maxwell/courses/tutorials/maketutor/ A Simple Makefile Tutorial]
:* week 3
::* [http://newbiedoc.sourceforge.net/text_editing/vim.html#MODES-CL A Simple VIM Tutorial]
:* week 4
::* [[Media:ConveySystemAdministrationGuide.pdf | Convey System Administration Guide]]
* Zhong Hu
::* CUDA Global Memory Usage & Strategy. [http://developer.download.nvidia.com/CUDA/training/cuda_webinars_GlobalMemory.pdf]
::* CUDA C++ code samples.[http://docs.nvidia.com/cuda/cuda-samples/index.html]
:* make-up for week 2
::* QR ecomposition on GPUs[http://dl.acm.org/citation.cfm?id=1513904]
::* Introduction to Householder algorithm in QR decomposition application[http://math.fullerton.edu/mathews/n2003/householdermod.html]
:* make-up for week 3
::* CUDA Memory Model[https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=7&cad=rja&ved=0CEoQFjAG&url=https%3A%2F%2Fhub.vscse.org%2Fsite%2Fresources%2F2010%2F06%2F00048%2FCUDA_04.pdf&ei=_dwZUY73NKji2gWqo4GYDQ&usg=AFQjCNGgxpCFWYepx6v32fTHNyRI1pOOtA&sig2=6TW0elRmtCKW3i_fAqAT_g&bvm=bv.42261806,d.b2I]
::* CUBLAS Library Usage Reference[https://www.docs.nvidia.com/cuda/pdf/CUDA_CUBLAS_Users_Guide.pdf]
:* week 4
::* system Verilog tutorial[http://www.asic-world.com/systemverilog/tutorial.html]

Team Challenger

2013-02-05T21:49:32Z

Xinying: /* Wiki Contributions */

Team Challenger

2013-01-29T04:36:05Z

Xinying: /* Wiki Contributions */

Team Challenger

2013-01-22T22:39:40Z

Xinying: /* Wiki Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Wiki Contributions ==

* Xinying Wang
:* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
:* Weekly presentation slides [[Media:week1slides.pptx]]
* Qilin Li
* Zhong Hu
:* CUDA Global Memory Usage & Strategy. [http://developer.download.nvidia.com/CUDA/training/cuda_webinars_GlobalMemory.pdf]
:* CUDA C++ code samples.[http://docs.nvidia.com/cuda/cuda-samples/index.html]

Main Page

2013-01-22T22:37:36Z

Xinying: /* Helpful Guides */

== Articles ==
=== Convey HC-1 Tutorials ===
* [[Connecting to convey-1.ece.iastate.edu]]
* [[Convey environment setup|Setting Up Environment Variables on Convey's HC-1]]
* [[Running the Vector Adder Example Application]]
* Convey pdk tutorial: [[image:ConveyTutorial1.pdf]] (uses newCnyProject script)
* [[Analyze the Simpleton Basic App]]
* [[Tutorial: Creating a Custom Bitfile | Create a Custom Bitfile]]
* [[Using a Custom Bitfile in C Code]]
* [[Adding VHDL Files to a Project]]
* [[The Verilog Hardware Interface for CAE]]
* [[Using ISE's Core Generator to build FIFOs and other IP cores]]
* [[Running Different Bitfiles on each AE | Projects with Multiple Bitfiles]]
* [[Using the Write-Complete Interface]]
* [[Using the Timing Analyzer]]

* [[Using SPAT]]
* [[Using GPROF]]
* [[Convey vector example | Example of Loop Unrolling using FPGA]]
* [[Sobel Algorithm | Speeding up Sobel Algorithm]]

== Reference Manuals ==
=== Convey ===
* [[Media:ConveyPDKReferenceManual.pdf | Convey PDK Reference Manual (.pdf)]] (updated to V5.2; April 2012)
* [[Media:ConveyProgrammersGuide.pdf | Convey Programmers Guide (.pdf)]] (updated to V1.8; November 2010)
* [[Media:ConveyReferenceManual.pdf | Convey Reference Manual (.pdf)]]
* [[Media:ConveySpatUsersGuide.pdf | Convey SPAT (Simulator Performance Analysis Tool) Guide]]
* [[Media:Convey PDK Training.pdf | Convey PDK (.pdf)]]
* [[Media:Convey Overview.pdf | Convey Overview (.pdf)]]

The newet version of these documents are available at [http://www.conveysupport.com/help/?page_id=112 Convey's Support Site]

=== CUDA ===
* [[Media:CUDA_C_Programming_Guide.pdf | CUDA_C_Programming_Guide (.pdf)]]
* [[Media:CUDA_C_Best_Practices_Guide.pdf | CUDA_C_Best_Practices_Guide(.pdf)]]
* [[Media:CUDA_Memory.pdf | CUDA_Memory (.pdf)]]

==Links==
* [http://www.asic-world.com www.asic-world.com] - Great Tutorials for those Learning HDLs
* [http://memocode.irisa.fr MemoCODE 2012]
** [[Media:2012-memocode-contest.pdf | MemoCODE Contest.pdf]]
** [http://memocode.irisa.fr/2012/2012-memocode-contest.tar.gz Reference Implementation]
** [ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/reference/human_g1k_v37.fasta.gz Human Reference Genome (human_g1k_v37.fasta.gz)]
** [ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/data/NA06985/sequence_read/ERR050082.filt.fastq.gz Example Reads (ERR050082.filt.fastq.gz)]
** [http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data/NA06985/sequence_read/ERR050082.filt.fastq.gz Example Reads (Alternative Link) (ERR050082.filt.fastq.gz)]

* [[2010 Main Page | CprE 584 2010 Wiki Main Page]]
* [http://class.ee.iastate.edu/cpre583/ CprE 583 Website]
* [http://class.ece.iastate.edu/cpre584/ CprE 584 Website]

=== Other Articles ===
* [[Assignment|Assignments]]
* [[A quick start on CUDA]]

== Helpful Guides ==
* [http://www.c7t-hdl.com/Docs/C7T_AN05_Customized_WaveView_ModelSim_ISE.pdf Modelsim and ISE]
* [http://www.fpga.com.cn/hdl/training/verilog%20reference%20guide.pdf The Verilog Golden Reference]
* [http://courseware.ee.calpoly.edu/~bmealy/shock_awe_vhdl_adobe.pdf "The Shock and Awe" VHDL Tutorial]
* [http://esd.cs.ucr.edu/labs/tutorial/ VHDL Simple Code Examples]
* [http://www.seas.upenn.edu/~ese171/vhdl/vhdl_primer.html VHDL Primer]
* [http://www.kxcad.net/electronic_Xilinx_guide/mergedProjects/xsim/html/xs_p_ml_instantiation.htm Using VHDL components in Verilog]
* [[Media:Modelsim_pe_user_10.0d.pdf | Modelsim Users Guide]]
* [[Useful Modelsim Commands]]
* [http://sn0v.wordpress.com/2012/12/07/installing-cuda-5-on-ubuntu-12-04/ Installing CUDA on Ubuntu]
* [http://graphics.stanford.edu/~mhouston/public_talks/R520-mhouston.pdf General Purpose Computation on GPUs (GPGPU)]
* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]

== Readings for Memocode 2012 ==
*[[Media:Brief_Bioinform-2010-Li-473-83.pdf|A survey on algorithms for sequencing]]
*[[Media:Gb-2009-10-3-r25.pdf|Burrows-Wheeler indexing]]

== Spring 2012 Teams ==
* [[Team Gryffindor]]
* [[Team Slytherin]]
* [[Team 142857]]
== Spring 2013 Teams ==
* [[Team Cyc05]]
* [[Team Challenger]]
* [[Team Blitz]]

Team Challenger

2013-01-22T22:33:54Z

Xinying: /* Wiki Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Wiki Contributions ==

* Xinying Wang
:* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
:* Weekly presentation slides[[Media:week_1_slides.ppt]]
* Qilin Li
* Zhong Hu
:* CUDA Global Memory Usage & Strategy. [http://developer.download.nvidia.com/CUDA/training/cuda_webinars_GlobalMemory.pdf]
:* CUDA C++ code samples.[http://docs.nvidia.com/cuda/cuda-samples/index.html]

Team Challenger

2013-01-22T22:25:21Z

Xinying: /* Wiki Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Wiki Contributions ==

* Xinying Wang
:* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
:* Weekly presentation slides
* Qilin Li
* Zhong Hu
:* CUDA Global Memory Usage & Strategy. [http://developer.download.nvidia.com/CUDA/training/cuda_webinars_GlobalMemory.pdf]
:* CUDA C++ code samples.[http://docs.nvidia.com/cuda/cuda-samples/index.html]

Team Challenger

2013-01-22T15:20:49Z

Xinying: /* Week 1 Contributions */

Team Challenger

2013-01-22T15:18:47Z

Xinying: /* Week 1 Contributions */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Week 1 Contributions ==

* Xinying Wang
:* Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]
* Qilin Li
* Zhong Hu

Team Challenger

2013-01-22T15:17:18Z

Xinying: /* Week 1 Contributions */

Team Challenger

2013-01-22T05:11:54Z

Xinying: /* Team Members */

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu

== Week 1 Contributions ==

* Xinying Wang
Convey vector personalities offer OpenMP-like programming approach with FPGA accelerating. [http://www.fpl2012.org/Presentations/W4B2.pdf]

Main Page

2013-01-21T06:21:11Z

Xinying: /* Spring 2013 Teams */

== Articles ==
=== Convey HC-1 Tutorials ===
* [[Connecting to convey-1.ece.iastate.edu]]
* [[Convey environment setup|Setting Up Environment Variables on Convey's HC-1]]
* [[Running the Vector Adder Example Application]]
* Convey pdk tutorial: [[image:ConveyTutorial1.pdf]] (uses newCnyProject script)
* [[Analyze the Simpleton Basic App]]
* [[Tutorial: Creating a Custom Bitfile | Create a Custom Bitfile]]
* [[Using a Custom Bitfile in C Code]]
* [[Adding VHDL Files to a Project]]
* [[The Verilog Hardware Interface for CAE]]
* [[Using ISE's Core Generator to build FIFOs and other IP cores]]
* [[Running Different Bitfiles on each AE | Projects with Multiple Bitfiles]]
* [[Using the Write-Complete Interface]]
* [[Using the Timing Analyzer]]

* [[Using SPAT]]
* [[Using GPROF]]
* [[Convey vector example | Example of Loop Unrolling using FPGA]]
* [[Sobel Algorithm | Speeding up Sobel Algorithm]]

== Reference Manuals ==
=== Convey ===
* [[Media:ConveyPDKReferenceManual.pdf | Convey PDK Reference Manual (.pdf)]] (updated to V5.2; April 2012)
* [[Media:ConveyProgrammersGuide.pdf | Convey Programmers Guide (.pdf)]] (updated to V1.8; November 2010)
* [[Media:ConveyReferenceManual.pdf | Convey Reference Manual (.pdf)]]
* [[Media:ConveySpatUsersGuide.pdf | Convey SPAT (Simulator Performance Analysis Tool) Guide]]
* [[Media:Convey PDK Training.pdf | Convey PDK (.pdf)]]
* [[Media:Convey Overview.pdf | Convey Overview (.pdf)]]

The newet version of these documents are available at [http://www.conveysupport.com/help/?page_id=112 Convey's Support Site]

=== CUDA ===
* [[Media:CUDA_C_Programming_Guide.pdf | CUDA_C_Programming_Guide (.pdf)]]
* [[Media:CUDA_C_Best_Practices_Guide.pdf | CUDA_C_Best_Practices_Guide(.pdf)]]
* [[Media:CUDA_Memory.pdf | CUDA_Memory (.pdf)]]

==Links==
* [http://www.asic-world.com www.asic-world.com] - Great Tutorials for those Learning HDLs
* [http://memocode.irisa.fr MemoCODE 2012]
** [[Media:2012-memocode-contest.pdf | MemoCODE Contest.pdf]]
** [http://memocode.irisa.fr/2012/2012-memocode-contest.tar.gz Reference Implementation]
** [ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/reference/human_g1k_v37.fasta.gz Human Reference Genome (human_g1k_v37.fasta.gz)]
** [ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/data/NA06985/sequence_read/ERR050082.filt.fastq.gz Example Reads (ERR050082.filt.fastq.gz)]
** [http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data/NA06985/sequence_read/ERR050082.filt.fastq.gz Example Reads (Alternative Link) (ERR050082.filt.fastq.gz)]

* [[2010 Main Page | CprE 584 2010 Wiki Main Page]]
* [http://class.ee.iastate.edu/cpre583/ CprE 583 Website]
* [http://class.ece.iastate.edu/cpre584/ CprE 584 Website]

=== Other Articles ===
* [[Assignment|Assignments]]
* [[A quick start on CUDA]]

== Helpful Guides ==
* [http://www.c7t-hdl.com/Docs/C7T_AN05_Customized_WaveView_ModelSim_ISE.pdf Modelsim and ISE]
* [http://www.fpga.com.cn/hdl/training/verilog%20reference%20guide.pdf The Verilog Golden Reference]
* [http://courseware.ee.calpoly.edu/~bmealy/shock_awe_vhdl_adobe.pdf "The Shock and Awe" VHDL Tutorial]
* [http://esd.cs.ucr.edu/labs/tutorial/ VHDL Simple Code Examples]
* [http://www.seas.upenn.edu/~ese171/vhdl/vhdl_primer.html VHDL Primer]
* [http://www.kxcad.net/electronic_Xilinx_guide/mergedProjects/xsim/html/xs_p_ml_instantiation.htm Using VHDL components in Verilog]

== Readings for Memocode 2012 ==
*[[Media:Brief_Bioinform-2010-Li-473-83.pdf|A survey on algorithms for sequencing]]
*[[Media:Gb-2009-10-3-r25.pdf|Burrows-Wheeler indexing]]

== Spring 2012 Teams ==
* [[Team Gryffindor]]
* [[Team Slytherin]]
* [[Team 142857]]
== Spring 2013 Teams ==
* [[Team Cyc05]]
* [[Team Challenger]]

Team Challenger

2013-01-21T06:19:49Z

Xinying: New page: == Team Members == * Xinying Wang * Qilin Li * Zhong Hu

== Team Members ==

* Xinying Wang
* Qilin Li
* Zhong Hu