https://wikis.ece.iastate.edu/cpre584/api.php?action=feedcontributions&feedformat=atom&user=Ugupta 2026-06-07T20:33:29Z User contributions MediaWiki 1.42.1 https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=944 2013-05-12T07:23:05Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Media:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High Performance Heterogeneous Computing with the Convey HC-1]]<br /> ::* [[Media:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf | Iowa State University 2012 MemoCODE]]<br /> :*Week 2<br /> ::* [[Media:01-LanguageWhitePaper.pdf‎ | Difference between VHDL, Verilog and SystemVerilog]]<br /> :*Week 6 <br /> ::* [[Media:PR_Broad.pdf‎ | Convey HC in Genome Sequencing]]<br /> :*Week 10<br /> ::* [[Media:Nelson_T_0_0_2000_Implementa.pdf | IMPLEMENTATION OF IMAGE PROCESSING ALGORITHMS ON FPGA HARDWARE]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=File:Nelson_T_0_0_2000_Implementa.pdf&diff=943 2013-05-12T07:22:29Z

<p>Ugupta: </p> <hr /> <div></div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=942 2013-05-12T07:13:25Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Media:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High Performance Heterogeneous Computing with the Convey HC-1]]<br /> ::* [[Media:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf | Iowa State University 2012 MemoCODE]]<br /> :*Week 2<br /> ::* [[Media:01-LanguageWhitePaper.pdf‎ | Difference between VHDL, Verilog and SystemVerilog]]<br /> :*Week 3 <br /> ::* [[Media:PR_Broad.pdf‎ | Convey HC in Genome Sequencing]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=File:PR_Broad.pdf&diff=941 2013-05-12T07:02:09Z

<p>Ugupta: </p> <hr /> <div></div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=940 2013-05-12T06:58:24Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Media:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High Performance Heterogeneous Computing with the Convey HC-1]]<br /> ::* [[Media:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf | Iowa State University 2012 MemoCODE]]<br /> :*Week 2<br /> ::* [[Media:01-LanguageWhitePaper.pdf‎ | Difference between VHDL, Verilog and SystemVerilog]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=File:01-LanguageWhitePaper.pdf&diff=939 2013-05-12T06:57:30Z

<p>Ugupta: </p> <hr /> <div></div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=938 2013-05-11T16:26:06Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Media:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High Performance Heterogeneous Computing with the Convey HC-1]]<br /> ::* [[Media:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf | Iowa State University 2012 MemoCODE]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=937 2013-05-11T16:25:02Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Media:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High Performance Heterogeneous Computing with the Convey HC-1]]<br /> ::* [[Image:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=936 2013-05-11T16:24:09Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Media:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | File]]<br /> ::* [[Image:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=934 2013-04-28T07:49:41Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Image:High-Performance Heterogeneous Computing with the Convey HC-1.pdf]]<br /> ::* [[Image:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=File:Iowa-State-University-2012-MemoCODE-Conference-design-contest-exact-match-short-read-aligner.pdf&diff=933 2013-04-28T07:49:17Z

<p>Ugupta: </p> <hr /> <div></div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=932 2013-04-28T07:47:47Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Image:High-Performance Heterogeneous Computing with the Convey HC-1.pdf]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=931 2013-04-28T07:46:13Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High-Performance Heterogeneous Computing with the Convey HC-1]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=930 2013-04-28T07:45:54Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[Image:High-Performance Heterogeneous Computing with the Convey HC-1.pdf | High-Performance Heterogeneous Computing with the Convey HC-1]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=File:High-Performance_Heterogeneous_Computing_with_the_Convey_HC-1.pdf&diff=929 2013-04-28T07:35:12Z

<p>Ugupta: </p> <hr /> <div></div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=928 2013-04-28T07:25:00Z

<p>Ugupta: /* Wiki Contributions */</p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> ==Velvet Genome Assembly Algorithm==<br /> *Velvet Algorithm<br /> :*[[Media:Velvet_Bruijn_graphs_2008.pdf | Reference Paper]]<br /> :*[[Media:velvet_poster.pdf | Poster]]<br /> :*[[Media:Blitz_week8.pdf | Presentation]]<br /> :*[[Media:1015333.pdf | Velvet Implementation on Convey]]<br /> <br /> *Links to Velvet Material<br /> :*[http://genome.cshlp.org/content/18/5/821.long Journal Article]<br /> :*[http://www.ebi.ac.uk/~zerbino/velvet/ Latest Version of Velvet software available for download]<br /> <br /> *Parallelizing Velvet Algorithm<br /> :*[[Media:1569511963.pdf | Reference Paper]]<br /> :*[[Media:Blitz_week9.pdf | Presentation]]<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> <br /> :*Week 1<br /> ::* [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> ::* [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> :*Week 2<br /> ::* [[Media:block_diag_vadd.jpg | Vector adder basic block diagram]]<br /> ::* [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules Verilog tutorial for beginners]<br /> :*Week 3 <br /> ::* [[Media:ConveyTutorial1_modified.pdf | Updated Convey PDK Tutorial]]<br /> ::* [http://www.asic-world.com/verilog/verilog_one_day.html Verilog in one day]<br /> :*Week 5<br /> ::* [[Media:mc_array10.jpg | FSM for reading an array from memory given the address of the array]]<br /> <br /> *Utkarsh<br /> :*Week 1<br /> ::* [[]]<br /> :*Week 2<br /> ::* [[]]<br /> :*Week 3 <br /> ::* [[]]<br /> :*Week 4<br /> ::* [[]]</div>

Ugupta https://wikis.ece.iastate.edu/cpre584/index.php?title=Team_Blitz&diff=789 2013-01-31T17:18:28Z

<p>Ugupta: </p> <hr /> <div>[[Image:Blitz.jpg|200px|thumb|right]]<br /> == Team Members ==<br /> <br /> * Parth Malkan<br /> * Rashmi Girmal<br /> * Shashank Reddy<br /> * Joy Shukla<br /> * Utkarsh Gupta<br /> <br /> == Wiki Contributions ==<br /> *Parth<br /> :*Week 1<br /> ::* [[Media:Unix Commands.pdf | Useful Unix Commands]]<br /> :*Week 2<br /> ::* [[Media:Dos to Unix.pdf | Dos to Unix translation]]<br /> <br /> *Shashank<br /> [http://www.youtube.com/watch?v=AGgkpaBHS78 | Useful video on HC-2 introduction]<br /> <br /> *Joy and Rashmi<br /> [[Media:02-CUDA_basic.pdf | CUDA Basics]]<br /> [[Media:Convey_HC-2_Architectual_Overview.pdf | Convey HC-2 Architectural Overview]]<br /> Week 2<br /> [[Media:block_diag.jpg | Vector adder basic block diagram]]<br /> [http://numato.com/learning-fpga-and-verilog-a-beginners-guide-part-2-modules | Verilog tutorial for beginners]</div>

Ugupta